The relationship between line of sight of a zeroed scope, the bore line of a barrel, and the flight path of a bullet that is angling upwards due to how the reticle was lowered during zeroing are obviously all working together to hit the target beyond maximum point blank range. All of those are very real, but with the drop related to bore axis being the least important, with bore axis labeled as 'Laser Beam' in Windrider's picture. It is not a drop that is useful for anything out in the world as Marine52 points out. But is a real thing, and it is hard fact that no bullet can ever rise above that line. Anyone that argues against that fact needs to study physics.
"The bullet rises relative to its launch point until it reaches the max ord"
Absolutely agreed for any accurate sighting system, whether it's $5,000 scope or the elevation adjustable buckhorn rear sight on an 1895 Winchester. But not true for a barrel clamped absolutely level relative to the center of the earth in a fixture at barrel maker's shop. To me, both of those horses are dead.
I'm new to this forum, and I'm new to long range precision shooting. But I'm not new to ballistics are hitting things like deer and hogs with rifles at 50 - 300+ yards, either with Kentucky windage elevation within 250 with a flat shooting cartridge like a .243, or BDC turret scopes for a .308, going all the way back to basic marksmanship in the Texas A&M Corp of Cadets in the late 70's. I just always used 100 yard zeroes in the East Texas woods where a 500+ yard shot is pretty much not happening, and I wouldn't take it if it were. That threw me off for a bit on the whole graphing topic. While all of that is trivial and irrelevant compared to true Military, Police or other expert long range marksmen and the current state of the art, it is relevant to understanding the basic concepts, which just aren't that difficult.
This has turned into a discussion of something more fundamental than what a ballistics graphing program is showing. I've proven to myself that the two I looked at correctly show the bullet drop and path of the projectile as it relates to a zeroed scope LOS. That's what's useful. But the quality of software varies widely, so it was a good exercise.
Edit: Marine52 posted while I was typing. He said it in a lot fewer words ;-)